Comics
Comico
- The Elementals (artist 1987)
- Fathom (artist 1987)
First Comics
- Classics Illustrated: The Scarlet Letter (artist 1989)
- The Chronicles of Corum (artist 1989)
DC Comics
- Wonder Woman (artist 1990-91)
- Sandman (artist with Neil Gaiman, 1991—93):
- "The Parliament of Rooks" in Fables and Reflections
- Brief Lives
- Black Orchid (artist 1993)
- The Invisibles (artist 1993, 1995,1997)
- Swamp Thing (artist 1994)
- Books of Magic (artist 1996)
- Seekers into the Mystery (artist 1996)
- Finals (creator/artist 1999)
- The Little Endless Storybook (writer/artist 2001)
- At Death’s Door (writer/artist 2002-2003)
- Dead Boy Detectives (writer /artist 2005)
- Fables: 1001 Nights of Snowfall: "Fair Division"
Marvel Comics
- Spider-Man: Shadows and Light
- X-Men Unlimited: Dazzler - Beyond the Music
Topps
Dark Horse Comics
- The Badger: Shattered Mirror (artist)
- The Dark Horse Book of:
- Hauntings: "Stray"
- Witchcraft: "Unfamiliar Story"
- The Dead: "Let Sleeping Dogs Lie"
- Monsters: "A Dog and His Boy"
- Beasts of Burden - 4-issue mini-series, Dark Horse Comics, 2009
Sirius Entertainment
- Scary Godmother books (all creator/writer/illustrator):
- The Scary Godmother (1997)
- The Revenge of Jimmy (1998)
- The Mystery Date (1999)
- The Boo Flu (2000)
- Scary Godmother comics:
- Scary Godmother: My Bloody Valentine (1998)
- Scary Godmother Holiday Spooktakular (1998)
- Scary Godmother Activity book (2000)
- Scary Godmother: Wild About Harry (2000)
- Scary Godmother: Ghoul’s Out for Summer (2000—2001)
Bongo Comics
- Bart Simpson's Treehouse of Horror (writer 2000)
- Bart Simpson's Treehouse of Horror (artist 2002)
Caliber Comics
- The Bandyman (artist 1999)
Scholastic
- Goosebumps Graphix: Terror Trips - One Day at HorrorLand (as illustrator)
Other material
Harper Collins Children's Books
Created by, written and illustrated by Thompson:
- Magic Trixie (2008)
- Magic Trixie Sleeps Over (2008)
- Magic Trixie and the Dragon (2009)
- The Curse of the Royal Ruby: A Rinnah Two Feathers Mystery (as illustrator)
- The Secret of Dead Man's Mine: A Rinnah Two Feathers Mystery (as illustrator)
- Mick Foley's Halloween Hijinx (as illustrator)
- Tales from Wrescal Lane (as illustrator)
Stageplay
Adaptation/ co-writer, art director, set designer:
- Scary Godmother 2001 at the Athanaeum Theatre in Chicago with Runamuck Productions
Scary Godmother Animated Specials
With Mainframe Entertainment:
- Halloween Spooktacular co-writer, editor, art director,background painter,prop designer, executive creative director
- The Revenge Of Jimmy creative consultation, executive producer, prop and character designer