Punktown

• Punktown (collection) (June 2000, Ministry of Whimsy Press)
• expanded edition published July 2003
• Monstrocity (novel) (May 2003, Prime Books, 236 pages)
• Everybody Scream! (novel) (August 2004, Raw Dog Screaming Press, 291 pages)
• Punktown: Third Eye (anthology) (2004, Prime Books, 162 pages)
• Punktown: Shades of Grey (with Scott Thomas) (anthology) (2005, Bedlam Press/Necro Publications, 238 pages)
• Deadstock (novel) (February 2007, Solaris Books, 416 pages)
• Blue War (novel) (February 2008, Solaris Books, 416 pages)
• Health Agent (novel) (2008, Raw Dog Screaming Press)
• Voices from Punktown (collection) (2008, Dark Regions Press, 208 pages)

Hades

• Letters From Hades (novel) (March 2003, Bedlam Press, 240 pages)
• Ugly Heaven, Beautiful Hell (novella) (split release with Carlton Mellick III) (Dec. 2007, Corrosion Press, 276 pages)
• Voices from Hades (collection) (2008, Dark Regions Press, 169 pages)
• The Fall of Hades (novel) (2010, Dark Regions Press)

Old Ones Trilogy

• The Bones of the Old Ones and Other Lovecraftian Tales (1995, chapbook, Necropolitan Press, 70 pages)
• second printing in 1999 with four extra pages
• Avatars of the Old Ones: Mythos Tales (1999, chapbook, Imelod Publications, 48 pages)

Collections

• Terror Incognita (March 2000, Delirium Books, 158 pages)
• 2003 trade paperback reprint doesn't have story notes
• AAAIIIEEE!!! (January 2002, iUniverse, 212 pages)
• Nether: Improper Bedtime Stores (with Scott Thomas) (June 2004, Delirium Books)
• Honey Is Sweeter Than Blood (June 2004, Delirium Books)
• containing just Jeffrey Thomas' contributions to Nether
• Unholy Dimensions (2005, Mythos Books, 288 pages)
• Thirteen Specimens (Feb. 2006, Delirium Books, 291 pages)
• Doomsdays (Oct. 2007, Dark Regions Press, 264 pages)
• Nocturnal Emissions (Jul. 2010, Dark Regions Press, 198 pages)

Novels

• The Arms of the Sun (March 2004, Delirium Books, 67 pages)
• Boneland (July 2004, Bloodletting Press, 167 pages)
• A Nightmare on Elm Street: The Dream Dealers (July 2006, Black Flame, 416 pages)
• Thought Forms (2009, Dark Regions Press)

Chapbooks

• Black Walls, Red Glass (Sept. 1997, Marietta Publishing, 66 pages)
• These Are The Exhibits (2003, Camelot Books & Gifts, 8 pages)
• Godhead Dying Downwards (May 2003, Earthling Publications, 40 pages)
• Unknown Pleasures: Dark Erotica (with Mark Howard Jones) (July 2003, Raw Dog Screaming Press, 48 pages)
• A Puppet Show For No One (March 2004, Delirium Books)

Anthologies edited

• 1996 A Vampire Bestiary
• 1999 Anomalies of Literature