Aliens

• 1993, The Female War: The third of the novel series; co-written with her father Steve Perry and adapted from the Dark Horse Comics mini-series. ISBN 978-0-553-56159-3.
• 1996, Labyrinth: The sixth of the series; novel set in a Xenomorph nest and adapted from a Dark Horse Comics mini-series. ISBN 978-0-553-57491-3.
• 1998, Berserker: The ninth of the series, also adapted from a Dark Horse Comics mini-series. ISBN 978-0-553-57731-0.
• 2008, Criminal Enterprise: The thirteenth of the series, an original novel. ISBN 978-1-59582-003-7.

Aliens vs. Predator

• 1994, Prey (with Steve Perry), Spectra Books, 272 pages, ISBN 978-0-553-56555-3.
• 1999, War, 208 pages, Spectra Books, ISBN 978-0-553-57732-7.

Resident Evil

• 1998, Book 1: The Umbrella Conspiracy, a novelization of the original Resident Evil. ISBN 978-0-671-02439-0.
• 1998, Book 2: Caliban Cove an original story set on the island of Caliban Cove. Rebecca Chambers and her team attempt to stop a rogue scientist from spreading a new T-Virus strain. A new STARS team is introduced from the Maine Exeter branch. ISBN 978-0-671-02440-6.
• 1999, Book 3: City of the Dead, a novelization of Resident Evil 2. ISBN 978-0-671-02441-3.
• 1999, Book 4: Underworld is another original novel starring Claire Redfield, Rebecca Chambers and Leon S. Kennedy attempting to take down Umbrella Corporation by infiltrating a facility in Utah known as the Planet. John Andrews and David Trapp, the surviving STARS members from the Maine branch, return from Caliban Cove. ISBN 978-0-671-02442-0.
• 2000, Book 5: Nemesis, a novelization of Nemesis. ISBN 978-0-671-78496-6.
• 2001, Book 6: Code Veronica a novelization of Veronica. ISBN 978-0-671-78498-0.
• 2004, Book 0: Zero Hour, a novelization of Resident Evil Zero. ISBN 978-0-671-78511-6.

Star Trek: Deep Space Nine

• 2001 The Avatar, Book One ISBN 978-0-7434-0050-3.
• 2001 The Avatar, Book Two ISBN 978-0-7434-0051-0.
• 2003 Rising Son ISBN 978-0-7434-4838-3.
• 2003 Unity ISBN 978-0-7434-9654-4.
• 2008 Terok Nor: Night of the Wolves with Britta Dennison
• 2008 Terok Nor: Dawn of the Eagles with Britta Dennison

• 2001 Cloak ISBN 978-0-671-77471-4.

• 2010 Inception ISBN 978-0-7434-8250-9

Miscellaneous works

The novel focuses on plotting, character interaction, and small, well-planned strikes against Cardassians. Unlike many other Star Trek books, Night of the Wolves doesn't feature space battles or any large-scale battles at all. The characterization is superb, and so is author S.D. Perry's attention to the extant information from the television series.